MmuINT0114171 @ mm9
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:114935631-114936937:-
Coord C1 exon
chr7:114936748-114936937
Coord A exon
chr7:114935655-114936747
Coord C2 exon
chr7:114935631-114935654
Length
1093 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
TCTTTCTTTTTCTTTCTCAGGCC
3' ss Score
12.23
Exon sequences
Seq C1 exon
GGAGATTCAGGAGGGTCACTTATGTGCCAGAATAGGAAAGGGGCCTGGACTCTGGCTGGAGTGACTTCTTGGGGTTTGGGCTGTGGTCGAAGCTGGAGAAACAATGCAAGAAAGAAAGAGCAAGGATCTCCTGGAATCTTCACAGATCTTAGGAGAGTGCTTCCCTGGATCCTCAAACATATCCAGACTG
Seq A exon
GTAATGAAGCCATCCTGCAAGCTTAGACAGCTACAGTTCTACCGGGGTAAAGAGCATTAGCAGACTAGACAATCGTAACTGGAGAGGGCCACTTCTTTTCTCAGTGTAATGCTTGAGGATTTTGAAATGTATGATCTACTACAAGAGCAAAACATCATATAAATCTAAGTATTAAAATATTTACTGAAGAATGAATGTATTCCTCATAAATTGATTAAACTTTGCCTATGATAGAAACTATGTCATCCACTAATGTAGATAGATAGGTAGATAGATAGATAGATAGATAGATAGATATCCACCTACTATCCTAGCAAGATTCAGCAAGCGAAAGCGCAGCTCAGTAATGAACAACCACTGATAATCTGACTACCCAGAGAATGATATTTCTCTGGAAATATTTTCAGATGTCACAATTAAAAAGGGGACACCAGCACCTAGTAGATAGAGGTCACAGGGCCTTCTAAGCCATGTACAGTACTGCAAACAGTGCTCACCGTAATGAATAGTGTCACCTAAATAAATAAGACAGGAGATTTAGAAATCCAGGTATAAAAGCAAATGTGGTAAATTTGAGGGACAGGCTCTATGTGCACCCTTCTAGTAGACCAGCCAGGAGGAAAAAAAATGCAGCTTCGTTTCTACCTCCAAACTGTTTCCTTAACTGGTGTCTTCAAGTCTCAAAGTGGCTTCCATCATTTCTCAGTGGATTAACTTAAGTTACCTCAGAATTTTTTTCAAGAGTATAGTATAATGACAGGTATCTGAACGTCAGTGTGGGACTACTCAAAATGTTCATGATTGGAGGCAGGTTATCTCTATCTCTGGCCTCCACTCTCAAGCATCCTTGGCTCCTTTTGTTCTGTGTAATCTCCAAGTTAATCACTGTTTCGTCGTTAGTAAGAATAAAGCACGTGAGATCATCTCAAAACTCCAGGACCGCTATCCTGCTTTATCATTTTACCTGGCCTGTTCTTTTCACAGATTAAATTTTCAGTATTTACATGTTGACTTAAAATGCTCTGCTTTTCAAGTCAATTTCTTGTCCAAGGTACCACAAGCTTTGAATTGCATCTTTCTTTTTCTTTCTCAG
Seq C2 exon
GCCATCGAAGGAAGAGCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-Ovch2:NM_172908:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.0=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTCAGGAGGGTCACTT
R:
CTTTGGTGCTCTTCCTTCGATG
Band lengths:
214-1307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: