MmuEX6012987 @ mm10
Exon Skipping
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:107790323-107793423:-
Coord C1 exon
chr7:107793234-107793423
Coord A exon
chr7:107792117-107792140
Coord C2 exon
chr7:107790323-107790413
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTTCTTTCTCAGGCC
3' ss Score
12.23
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGAGATTCAGGAGGGTCACTTATGTGCCAGAATAGGAAAGGGGCCTGGACTCTGGCTGGAGTGACTTCTTGGGGTTTGGGCTGTGGTCGAAGCTGGAGAAACAATGCAAGAAAGAAAGAGCAAGGATCTCCTGGAATCTTCACAGATCTTAGGAGAGTGCTTCCCTGGATCCTCAAACATATCCAGACTG
Seq A exon
GCCATCGAAGGAAGAGCACCAAAG
Seq C2 exon
CTTTATGCAGTGAGCCTGATGGTCTCATCAGTGGGTCTGAGGGAGAGCTGCACTTCCCAGAAAGCCTCCACCTGTACTATGAGAGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-'9-10,'9-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.0=87.5)
A:
NO
C2:
PF0043115=CUB=PU(25.9=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGCTTCCCTGGATCCTC
R:
GTGGAGGCTTTCTGGGAAGTG
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types