HsaEX6007560 @ hg19
Exon Skipping
Gene
ENSG00000122592 | HOXA7
Description
homeobox A7 [Source:HGNC Symbol;Acc:5108]
Coordinates
chr7:27196073-27197555:-
Coord C1 exon
chr7:27197443-27197555
Coord A exon
chr7:27196737-27196907
Coord C2 exon
chr7:27196073-27196373
Length
171 bp
Sequences
Splice sites
3' ss Seq
TATTTCACTGCTTCCTTTAGGGC
3' ss Score
8.3
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGGCAGTTTATGAGGCGTTTAGGGGAAGGGTTCTCCCCACCATCCTCCACCGAGCGGTGGGCGGCAGGGGCTTCAGCTGGTGCAACATGGTGCAGGGGTCGGAGGCCTGGAAG
Seq A exon
GGCGGATAAACAGTGTGCCTCCGATTAAGGAAAGGAAGCTGGGAGACGTTGACTTTATTCGAACCACATGGCTCCAGTTTGCGGTGGCAATCTCTCTGCAGCTGCAAGAGATGCTGCGCCTTCCCCGTCTGGATCCGAGTCTAAGTCCGGCCTGTCGCCCACTGGACCTGG
Seq C2 exon
GCGGCTGCGGGCCCTGCGGAGCGAGACCACCTGTGAGGACTGCTGAGATTGGCGGAGGCGGTCATGTGGGCGGTCACGTGCTGCGGCGAGCTCCGTCCAAAAGAAAATGGGGTTTGGTGTAAATCTGGGGGTGTAATGTTATCATATATCACTCTACCTCGTAAAACCGACACTGAAAGCTGCCGGACAACAAATCACAGGTCAAAATTATGAGTTCTTCGTATTATGTGAACGCGCTTTTTAGCAAATATACGGCGGGGGCTTCTCTGTTCCAAAATGCCGAGCCGACTTCTTGCTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122592-'1-1,'1-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF080986=ATX_III=WD(100=71.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCTGGTGCAACATGGT
R:
CCTGTGATTTGTTGTCCGGCA
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)