MmuEX0023196 @ mm10
Exon Skipping
Gene
ENSMUSG00000038236 | Hoxa7
Description
homeobox A7 [Source:MGI Symbol;Acc:MGI:96179]
Coordinates
chr6:52217513-52218711:-
Coord C1 exon
chr6:52218634-52218711
Coord A exon
chr6:52217933-52218084
Coord C2 exon
chr6:52217513-52217613
Length
152 bp
Sequences
Splice sites
3' ss Seq
TATTTCACTGCTTCCTTTAGGGC
3' ss Score
8.3
5' ss Seq
CAGGTCTTA
5' ss Score
0.67
Exon sequences
Seq C1 exon
ATCCTCCAGAGAGCGTTGGGCAGCAGAGCCTTCACCCGACCTATCATTGCAGGGGGAGGGGGTCTGAAGCCCAGCAAG
Seq A exon
GGCAGATAAACAGTGCGCCGCCGATTAAAGAAAGGAAGCTGAGAGACGTTGACTTTATTCGAACCACATGGTTCCAGTTTGTGGCAGCGGTCTCTCCGCTCGGCTAGAGGAGACACCGCGCCTGCGGTGTTGGCGCTGGAGCATCAAATCAG
Seq C2 exon
GAGGCAGGCGGCCCGTGGCGCGGGACCACCTGTGAGGGCTGCTGAGATTGGCGGAGGCGGTCATGTGGGCGGTCACGTGCCGCGGCGAGCTCCGTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038236-'4-3,'4-2,5-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.033 C2=0.273
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000153280fB11226
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCCAGAGAGCGTTGGG
R:
TTTTGGACGGAGCTCGCC
Band lengths:
179-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types