MmuEX0023196 @ mm9
Exon Skipping
Gene
ENSMUSG00000038236 | Hoxa7
Description
homeobox A7 [Source:MGI Symbol;Acc:MGI:96179]
Coordinates
chr6:52167029-52171853:-
Coord C1 exon
chr6:52171546-52171853
Coord A exon
chr6:52167932-52168083
Coord C2 exon
chr6:52167029-52167296
Length
152 bp
Sequences
Splice sites
3' ss Seq
TATTTCACTGCTTCCTTTAGGGC
3' ss Score
8.3
5' ss Seq
CAGGTCTTA
5' ss Score
0.67
Exon sequences
Seq C1 exon
CCAGAGCAGCTGCGGCTGCAGTGCCAAGAAAATTCCAGGAGATGGCAGTGTGGCTCCACGCAAGAGGCTTTCTCGCCGCCATCTCCGGCCGCCGAGACCTAGGAAGCTCCTAAAATGTCGACTTGAAGCGAGCCTTTCTGGAATGGGATTTGTGTGAGCAGCAGTCGTATATTTTCCCTGCTGCTCATGCCAGCCTGAAAGCCTCCAAGGGACACAGCATGCGCCGGGGCTTGCCTGACCTTCGGCGCTCGCTCCTCCCCGGCCCCATTCCGAGACCGCTGTGTTGCGTGGCAGCAGCGACGCCGAAG
Seq A exon
GGCAGATAAACAGTGCGCCGCCGATTAAAGAAAGGAAGCTGAGAGACGTTGACTTTATTCGAACCACATGGTTCCAGTTTGTGGCAGCGGTCTCTCCGCTCGGCTAGAGGAGACACCGCGCCTGCGGTGTTGGCGCTGGAGCATCAAATCAG
Seq C2 exon
AGAAGCGGCTACGGGCCGGGCGCCGGCGCCTTCGCCTCCACTGTGCCGGGCTTATACAATGTCAACAGCCCCCTCTATCAGAGCCCCTTCGCGTCCGGCTATGGCCTGGGAGCCGACGCCTACAACCTGCCCTGCGCCTCCTACGACCAAAACATCCCCGGGCTCTGCAGTGACCTCGCCAAAGGCGCCTGCGACAAGGCGGACGAGGGCGTGCTTCACGGCCCGGCCGAAGCCAGTTTCCGCATCTACCCCTGGATGCGCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038236_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATTTGTGTGAGCAGCAG
R:
GAAGGGGCTCTGATAGAGGGG
Band lengths:
255-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: