HsaEX6011159 @ hg38
Exon Skipping
Gene
ENSG00000181220 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr7:149477564-149494070:-
Coord C1 exon
chr7:149493989-149494070
Coord A exon
chr7:149492859-149492972
Coord C2 exon
chr7:149477564-149477755
Length
114 bp
Sequences
Splice sites
3' ss Seq
AACCTTCTGTCTTTCCTCAGACT
3' ss Score
10.58
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
Seq A exon
ACTACGCCATCTCCAAGCCCGAGGTCCTCTCCCAGATTGAACAAGGGAAGGAGCCCTGCAACTGGCGCCGCCCTGGCCCCAAGATTCCAGATGTTCCTGTGGACCCCAGTCCAG
Seq C2 exon
GCTCGGGGCCCCCAGTTCCCGCCCCAGACCTCTTGATGCAGATCAAGCAGGAGGGTGAGCTCCAGCTCCAGGAGCAGCAGGCCCTGGGCGTGGAGGCGTGGGCAGCCGGGCAGCCAGATATTGGGGAGGAGCCCTGGGGCCTCAGCCAGCTGGATTCCGGAGCAGGAGACATCTCCACGGATGCCACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181220-'9-16,'9-7,12-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.615 C2=0.985
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(87.1=100)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
ENST00000340622fB30940
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGCAGAAGGAGCTCTA
R:
TGGCATCCGTGGAGATGTCTC
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains