RnoEX0101686 @ rn6
Exon Skipping
Gene
ENSRNOG00000007064 | Zfp746
Description
zinc finger protein 746 [Source:RGD Symbol;Acc:1306209]
Coordinates
chr4:77727962-77743746:-
Coord C1 exon
chr4:77743665-77743746
Coord A exon
chr4:77742750-77742863
Coord C2 exon
chr4:77727962-77728153
Length
114 bp
Sequences
Splice sites
3' ss Seq
AACCTCCTGTCTTTCCTCAGACT
3' ss Score
9.97
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GAGTGGGGCAAGCTGGAAGACTGGCAGAAGGAGCTCTACAAGCATGTGATGAGGGGCAACTACGAGACACTGGTTTCCCTGG
Seq A exon
ACTATGCCATCTCCAAACCCGAGGTCCTCTCCCAGATTGAACAAGGCAAGGAGCCATGCACCTGGCGTCGCACTGGCCCCAAGGTCCCGGAGGTTCCTGTGGACCCAAGTCCAG
Seq C2 exon
GTTCTGGAGCACCAGTTCCTGCCCCTGACCTCCTGATGCAAATCAAGCAAGAGGGGGAGCTCCAACTACAGGAGCAGCAGGCTCTGGGTGTGGAAGCCTGGGCAGCTGGACAACCAGATATTGGGGAAGAGCCGTGGGGCCTCAGCCAGTTGGACTCTGGAGCAGGAGACATCTCCACAGATGCTACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007064_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.615 C2=0.954
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(90.0=100)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGGAAGACTGGCAGAA
R:
ATGTCTCCTGCTCCAGAGTCC
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]