BtaEX6029350 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031106 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr4:113295857-113309373:-
Coord C1 exon
chr4:113309292-113309373
Coord A exon
chr4:113307642-113307755
Coord C2 exon
chr4:113295857-113296076
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACCCTTCTGTTCTTCTTCAGACT
3' ss Score
10.84
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGTGGGGCAAGCTGGACGAGTGGCAGAAGGAGCTGTACAAGCACGTGATGAGGGGCAACTATGAGACGCTGGTCTCCCTGG
Seq A exon
ACTACGCCATCTCCAAGCCCGAGGTCCTCTCTCAGATTGAACAGGGGAAGGAGCCGTGCAGCTGGCGTCGTGCTGGCCCCAAGGTTCCAGATGTTCCCGTGGACCCGAGTCCAG
Seq C2 exon
GCTCTGGGCCCCCCGTTCCTGCCCCTGACCTCTTAATGCAGATCAAGCAAGAAGGTGAGCTCCAGCTCCAGGAGCAGCAGGCTCTGGGTGTGGAGGCATGGGCAGCCGGACAGCCAGATATTGGGGAGGAGCCGTGGGGCCTCAGCCAGCTCGACTCTGGAGCAGGAGATGTCTCTACCGACGCTGCCTCTGGTGAGTGGCTGAGGCTGCGAGCAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031106-'5-5,'5-3,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.538 C2=0.743
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(87.1=100)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCAGAAGGAGCTGTACA
R:
GCGTCGGTAGAGACATCTCCT
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]