HsaEX6011178 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149516395-149517870:+
Coord C1 exon
chr7:149516395-149516604
Coord A exon
chr7:149516806-149516973
Coord C2 exon
chr7:149517739-149517870
Length
168 bp
Sequences
Splice sites
3' ss Seq
GGCCGTTCTCTTTCCCACAGTGC
3' ss Score
10.41
5' ss Seq
GTGGTATGG
5' ss Score
5.61
Exon sequences
Seq C1 exon
AGCTGCCCGTGTGCCCTGGCCCTGGCTGTGGGGCTGGGAACTGTTCCTGGACCTCCTGGGCCCCGTGGGAACCTTGCTCCCGCAGCTGCGGAGTGGGCCAGCAGCGCCGCCTGCGGGCATACCGTCCCCCTGGGCCCGGCGGGCACTGGTGCCCCAACATCCTTACTGCCTACCAAGAGCGCCGCTTCTGCAACCTGCGAGCCTGCCCAG
Seq A exon
TGCCCGGGGGCTGGTCACGCTGGAGTCCCTGGTCCTGGTGTGACCGCAGCTGTGGGGGAGGCCAATCCCTGAGAAGCCGCAGCTGCTCAAGCCCCCCATCCAAGAACGGGGGAGCCCCCTGTGCTGGGGAGCGGCACCAGGCCCGCCTCTGCAATCCCATGCCTTGTG
Seq C2 exon
AGGCCGGCTGCCCAGCAGGCATGGAGGTGGTCACCTGTGCCAACCGCTGCCCCCGCCGCTGCTCAGACCTCCAGGAGGGAATTGTGTGTCAGGACGACCAGGTCTGCCAGAAGGGCTGCCGCTGCCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'97-97,'97-96,98-97=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTTCCTGGACCTCCTG
R:
CCTCCTGGAGGTCTGAGCAG
Band lengths:
251-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)