HsaEX6014167 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84934644-84937536:+
Coord C1 exon
chr2:84934644-84934840
Coord A exon
chr2:84936467-84936670
Coord C2 exon
chr2:84937411-84937536
Length
204 bp
Sequences
Splice sites
3' ss Seq
AAGCTTTCCCCCTTCTACAGCTT
3' ss Score
7.25
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CAAAGACCATGGCCCTGACAAAAGCACGTCTAGTACGTGCTGGAAAGCTGACAGCAGCATTAGAAGATGAGCAGGTTCGATGGGAAGAAAGCATACAGAAGTTTGAGGAAGAAATATCAAATATCACTGGGAACGTGTTCATAGCAGCAGCTTGTGTGGCCTACTATGGGGCTTTCACAGCCCAGTACAGGCAGTCA
Seq A exon
CTTATAGAGTGTTGGATCCAGGACTGTCAGTCTCTGGAGATCCCAATCGATCCTTCCTTCAGTCTCATTAACATTCTTGGAGATCCCTACGAGATACGGCAGTGGAACACTGATGGGCTGCCCCGTGACTTGATATCAACAGAAAATGGCATTTTGGTTACTCAAGGCAGAAGATGGCCTTTGATGATTGATCCCCAAGATCAG
Seq C2 exon
GCAAACCGTTGGATAAGGAACAAGGAAAGCAAAAGTGGTTTAAAGATCATTAAGCTTACAGATAGTAATTTCTTACGAATACTCGAGAATTCAATCCGACTTGGTTTACCTGTCTTACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'58-57,'58-56,59-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(19.4=100)
A:
PF127772=MT=PD(2.1=10.3),PF127812=AAA_9=PU(18.6=63.2)
C2:
PF127812=AAA_9=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGACAAAAGCACGTCTA
R:
AGACAGGTAAACCAAGTCGGA
Band lengths:
301-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)