RnoEX0028557 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101001930-101007207:-
Coord C1 exon
chr4:101007011-101007207
Coord A exon
chr4:101003050-101003253
Coord C2 exon
chr4:101001930-101002055
Length
204 bp
Sequences
Splice sites
3' ss Seq
GTAAATGTTTCTCCTTACAGCTT
3' ss Score
9.44
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CAAAGACCATGGCCCTGACCAAAGCGCGCCTGGTACGGGCTGGAAAGCTGACGGCTGCATTGGGAGATGAGCAGGTCCGGTGGGAAGAAAGCATTGAGAAATTCCAGGAGGAGATCGCAAACATCGTTGGAAACGTGTTTATAGCAGCCGCGTGTGTGGCTTATTACGGGGCCTTCACAGCCCAGTATAGGCAGTTG
Seq A exon
CTTATAGAGTGCTGGATTGACTCCTGCCTGGCCCTGGATATCCCCATTGACCCCTCCTTCAGCCTCATTAACACTCTTGGCGATCCCTACGAAATCCGGCAGTGGAATGCAGATGGGCTGCCCAGAGACTTGATATCCACTGAAAATGGCATTTTGGTTACTCAGGGGAGAAGGTGGCCTTTGATGATTGATCCCCAAGATCAA
Seq C2 exon
GCCAATCGCTGGATAAGAAACAAAGAAAGCAAGAGTGGGTTAAAGGTCATTAAGCTTACAGACACCAATTTCTTACGAATACTGGAAAATTCCATCCGACTGGGTTTACCTGTCTTACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'56-59,'56-58,57-59
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(19.4=100)
A:
PF127772=MT=PD(2.1=10.3),PF127812=AAA_9=PU(18.6=63.2)
C2:
PF127812=AAA_9=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCATGGCCCTGACCAAA
R:
AGGTAAACCCAGTCGGATGGA
Band lengths:
306-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]