MmuEX6004951 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73023369-73025853:-
Coord C1 exon
chr6:73025657-73025853
Coord A exon
chr6:73024567-73024770
Coord C2 exon
chr6:73023369-73023494
Length
204 bp
Sequences
Splice sites
3' ss Seq
ATAAATGGTCTTCCTTACAGCTT
3' ss Score
8.43
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CAAAGAACATGGCCCTGACCAAAGCGCGCCTGATACGTGCTGGAAAGCTAACGGCTGCATTAGGAGACGAGCAGGTTCGGTGGGAAGAAAGCATTGAGAAATTCCAGGAGGAGCTAGCAAACATCGTTGGAAACGTGTTCATAGCAGCAGCTTGCGTGGCTTATTACGGGGCTTTCACAGCCCAGTACAGGCAGCTG
Seq A exon
CTTATAGAGTGGTGGATTGAATCCTGCCTGGCCCTGGAGATCCCCATTGACCCCTCCTTCAGTCTCATTAACATTCTTGGTGACCCCTATGAAATCCGGCAGTGGAACACAGATGGACTGCCCAGAGACTTGATATCAACTGAGAATGGCATTTTGGTTACTCAGGGGAGAAGATGGCCTTTGATGATTGATCCTCAAGATCAG
Seq C2 exon
GCCAATCGATGGATAAGAAACAAGGAAAGCAAGAGTGGGTTAAAGGTCATTAAGCTTACAGACACCAATTTCTTACGAATACTGGAAAATTCCATCCGACTGGGTTTACCTGTCTTACTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'56-56,'56-55,57-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(19.4=100),PF0241312=Caudo_TAP=PD(6.8=12.1)
A:
PF127772=MT=PD(2.1=10.3),PF127812=AAA_9=PU(18.6=63.2)
C2:
PF127812=AAA_9=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGAACATGGCCCTGACCA
R:
AGGTAAACCCAGTCGGATGGA
Band lengths:
308-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: