HsaEX6016125 @ hg19
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:25191]
Coordinates
chr2:159035391-159107424:-
Coord C1 exon
chr2:159107284-159107424
Coord A exon
chr2:159077107-159077225
Coord C2 exon
chr2:159035391-159035508
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATGTAACATTTATACAATAGATA
3' ss Score
2.98
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTCGTCAATGGCGAGCCCACCAAGAAGAGGTAGCAAGACTGGAAATGGAAATTTCTGCCAGAAGAAGAGAAAAGGAAGAGGAGAAAGAGAAACTGTGGAAGAAGAAGGAATTGTTGCAAAGAGCAGAGAAGAAAAAAAAA
Seq A exon
ATAAAAAAATACTGGGCCAAGAAAAAACAGAAGTGGCAAGAAATGGAAATGAGAGATCTTCAGCGTCTAGAAGAACTGAAGAAATTAATCGCTGAACAGTCACTAAAAGACAGAGAAAG
Seq C2 exon
GGTTAAATATAGACAAGAATTATTGGAAAGGCGTTTGATGGAGAAAAAGGAAGTGGCCCTTCAAGAAGCTCATGAAGACAAAGAGAGAGCACGGCGGCTAGAAGCCCTTAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.175
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCACCAAGAAGAGGTA
R:
CTGTTTCCTAAGGGCTTCTAGC
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)