HsaEX6016125 @ hg38
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:158178879-158250912:-
Coord C1 exon
chr2:158250772-158250912
Coord A exon
chr2:158220595-158220713
Coord C2 exon
chr2:158178879-158178996
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATGTAACATTTATACAATAGATA
3' ss Score
2.98
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTCGTCAATGGCGAGCCCACCAAGAAGAGGTAGCAAGACTGGAAATGGAAATTTCTGCCAGAAGAAGAGAAAAGGAAGAGGAGAAAGAGAAACTGTGGAAGAAGAAGGAATTGTTGCAAAGAGCAGAGAAGAAAAAAAAA
Seq A exon
ATAAAAAAATACTGGGCCAAGAAAAAACAGAAGTGGCAAGAAATGGAAATGAGAGATCTTCAGCGTCTAGAAGAACTGAAGAAATTAATCGCTGAACAGTCACTAAAAGACAGAGAAAG
Seq C2 exon
GGTTAAATATAGACAAGAATTATTGGAAAGGCGTTTGATGGAGAAAAAGGAAGTGGCCCTTCAAGAAGCTCATGAAGACAAAGAGAGAGCACGGCGGCTAGAAGCCCTTAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237-'44-48,'44-37,50-48
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000409187fB11489
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCACCAAGAAGAGGTA
R:
CTGTTTCCTAAGGGCTTCTAGC
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains