GgaEX0018966 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37951757-37960435:-
Coord C1 exon
chr7:37960295-37960435
Coord A exon
chr7:37955833-37955951
Coord C2 exon
chr7:37951757-37951874
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTTCAATTTCTAGGTT
3' ss Score
10.05
5' ss Seq
ACGGTAAAA
5' ss Score
6.53
Exon sequences
Seq C1 exon
GTCCTGCAGTGGAGAGCACAGCAGGAGGAGGCGGCTGAGCTGGAAGCTGCTGTGGCTGCTAGAAGAAAAGAAAAGGAAGATGAGAAAGAAAGGATACAGAAAGAGCAGGAAATGATTCACAGAGCTCAGGAGAAAGAAAAA
Seq A exon
GTTAAAAAATACTTGGCTGAGAAACAGCTTAAGTGGCAAGAAAAGGAGGAAAAAGAGCTACAGCATTTGGAGGAACTAAGGAAATTAATGGCTAAACAAGCAGTGAAAGACAGAGAACG
Seq C2 exon
GGTAAAGTTCAGACAAGCTCTGCTAGAAAGGCGGATCCTGGAGAAAAAGGAAGAGGCCCTTCGAGAAGCACATGCAGCAGAGGAGAAAGAGAAATGCCTGGAAGCACTCCGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.489 A=0.050 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGAGCACAGCAGGAG
R:
GGAGTGCTTCCAGGCATTTCT
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event