GgaEX1013304 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37955833-37972058:-
Coord C1 exon
chr7:37971852-37972058
Coord A exon
chr7:37960295-37960435
Coord C2 exon
chr7:37955833-37955951
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTCAACCCTTTCTCTCAGGTC
3' ss Score
9.75
5' ss Seq
AAAGTATGA
5' ss Score
3.87
Exon sequences
Seq C1 exon
ATCACTCATGAGAAAGCTTGGGATCATTACAATTTCTTTAAGAATCAGCGCAGAGTCTTGATATTAAATTGGACTCAAGCTAGGAAGGCGTTCTTCCTGAAGGCGGTGATGGCTGTTGCTGAAGCCTCTGCTGCTCAGGAGGCAGAAGCAGTATCAGCTGGTAACAGACGAAAGCAACAGGAGATCTGTGCTGAGCTGAAAGCCAAG
Seq A exon
GTCCTGCAGTGGAGAGCACAGCAGGAGGAGGCGGCTGAGCTGGAAGCTGCTGTGGCTGCTAGAAGAAAAGAAAAGGAAGATGAGAAAGAAAGGATACAGAAAGAGCAGGAAATGATTCACAGAGCTCAGGAGAAAGAAAAA
Seq C2 exon
GTTAAAAAATACTTGGCTGAGAAACAGCTTAAGTGGCAAGAAAAGGAGGAAAAAGAGCTACAGCATTTGGAGGAACTAAGGAAATTAATGGCTAAACAAGCAGTGAAAGACAGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.489 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTCAAGCTAGGAAGGCG
R:
CGTTCTCTGTCTTTCACTGCT
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]