MmuEX6101426 @ mm10
Exon Skipping
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:58906355-58980576:-
Coord C1 exon
chr2:58980370-58980576
Coord A exon
chr2:58934369-58934509
Coord C2 exon
chr2:58906355-58906473
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGGGTTTCTATGTGTTTCAGGTT
3' ss Score
8.49
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTAGAACACGAGAAATACTGTGACCAGTATCACTTTGCTAGAGAGCAGAGAAGAATCCTGATAGACAATTGGAGCAGGAGCAGGAAAGACTTTATACAGAAAGCCATGCTGACTCTCCTCGAAGCCTGTGCAGCCCATGAAATGGGGAGCCTTCTGGCCAAGGACAGGAGACGGCAACAGGAACTATGTGCTGACCTGAAAGCCAAG
Seq A exon
GTTTCTCAATGGCGAGCCCAACAAGAAGAGCTATCAAGACTGGAAATGGAAATTTCAGCCAGAAGAAGAGAAAGGGAAGAAGAGAAAGAGAAATTGTGGAAAAAGAAGGAATTGCTACGAAGGGAGGAGACAGAGATTAAG
Seq C2 exon
ATAAGAAAATACTGGGCTATGAAACAGCAGAAGTGGCAAGAAATGGAAAAGAGAGATCTCCGGCGTCTGGAAGAGCTGAAGAAGTTAATGGCAGAACAGTCAGTGAAAGACAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641-'15-18,'15-15,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATTGGAGCAGGAGCAGG
R:
GTCTTTCACTGACTGTTCTGCCA
Band lengths:
255-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types