RnoEX6016931 @ rn6
Exon Skipping
Gene
ENSRNOG00000057740 | Ccdc148
Description
coiled-coil domain containing 148 [Source:RGD Symbol;Acc:1561169]
Coordinates
chr3:45009200-45086616:-
Coord C1 exon
chr3:45086410-45086616
Coord A exon
chr3:45033238-45033378
Coord C2 exon
chr3:45009200-45009318
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGGGTTTCTGTGTGTTTCAGGTT
3' ss Score
10.43
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTAGAACACGAGAGATACTGTGACCAGTATCATTTTACTAGAGAGCAGAGAAGAATTCTGATAGACAACTGGAATAGGAGCAGGGAAGACTTTATACAGAAGGCCACGCTGACTCTGCTCGAGGCCTGTGAAGCCCACGAAATGGAGAGCATGTTGGCCAAGGACAGGAAACGGCAACAGGAACTGTGTGCTGACCTGAAAGCCAAG
Seq A exon
GTTTCTCAATGGCGAGCCCAACAAGAAGAGCTATCAAGACTGGAAATGGAAATTTCAGCCCGAAGAAGAGAAAGGGAAGAGGAGAAAGAGAAATTGTGGAAAAAGAAGGAATTGCTACGAAGGGAGGAGACAGAGATTAAG
Seq C2 exon
ATAAGAAAATACTGGGCTAAGAAACAACAGGAGTGGCAAGAAATGGAAATGAGAGACCTCCAGCGTCTGGAAGAACTGAAGAAGTTAATGGCCGAACAGTCAGTGAAAGACAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057740-'18-31,'18-30,20-31=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGGAATAGGAGCAGGGA
R:
CTTTCACTGACTGTTCGGCCA
Band lengths:
252-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]