HsaEX6016805 @ hg38
Exon Skipping
Gene
ENSG00000138435 | CHRNA1
Description
cholinergic receptor nicotinic alpha 1 subunit [Source:HGNC Symbol;Acc:HGNC:1955]
Coordinates
chr2:174759331-174764472:-
Coord C1 exon
chr2:174764352-174764472
Coord A exon
chr2:174759488-174759633
Coord C2 exon
chr2:174759331-174759375
Length
146 bp
Sequences
Splice sites
3' ss Seq
GGTGTCATCTGCTGTCTCAGCTG
3' ss Score
4.3
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AGACAAGCACCCAGCCAGAGTGCCAGTGAGAAGCACAGGCCACCACTCTGCCCTGGTCCACACAAGCTCCGGTAGCCCATGGAGCCCTGGCCTCTCCTCCTGCTCTTTAGCCTTTGCTCAG
Seq A exon
CTGGCCTCGTCCTGGGCTCCGAACATGAGACCCGTCTGGTGGCAAAGCTATTTAAAGACTACAGCAGCGTGGTGCGGCCAGTGGAAGACCACCGCCAGGTCGTGGAGGTCACCGTGGGCCTGCAGCTGATACAGCTCATCAATGTG
Seq C2 exon
GATGAAGTAAATCAGATCGTGACAACCAATGTGCGTCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138435-'5-10,'5-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(69.6=79.6)
C2:
PF0293118=Neur_chan_LBD=FE(25.0=100),PF0293118=Neur_chan_LBD=PU(1.4=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAGTGCCAGTGAGAAG
R:
CTGTTTCAGACGCACATTGGT
Band lengths:
154-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains