MmuEX6102202 @ mm9
Exon Skipping
Gene
ENSMUSG00000027107 | Chrna1
Description
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87885]
Coordinates
chr2:73412378-73418395:-
Coord C1 exon
chr2:73418302-73418395
Coord A exon
chr2:73412543-73412688
Coord C2 exon
chr2:73412378-73412422
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATGTGTCATTTCCTGCCCAGCTG
3' ss Score
7.08
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGAGTAGGACCGGCAGCAAGCCGCTGGCGGCCACAGCGGCACCCACAGCCCATGGAGCTCTCGACTGTTCTCCTGCTGCTAGGCCTCTGCTCCG
Seq A exon
CTGGCCTTGTTCTGGGCTCCGAACATGAGACGCGTCTGGTGGCAAAGCTCTTTGAAGACTACAGCAGTGTAGTCCGGCCAGTGGAGGACCACCGTGAGATTGTACAAGTCACCGTGGGTCTACAGCTGATCCAGCTTATCAATGTG
Seq C2 exon
GATGAAGTAAATCAGATTGTGACAACCAATGTACGTCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027107-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
C2:
PF0293118=Neur_chan_LBD=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTAGGACCGGCAGCAAG
R:
TGTTTCAGACGTACATTGGTTGTCA
Band lengths:
138-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: