HsaEX6017555 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196863484-196866582:-
Coord C1 exon
chr2:196866399-196866582
Coord A exon
chr2:196865428-196865607
Coord C2 exon
chr2:196863484-196863966
Length
180 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTAATTTTTTGCAGGAT
3' ss Score
9.55
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGGTTTCCAGAAGTGCAGAATATTTATTACCAAGGTAATAAAAAAAAGCAATTGCCAACTGGTGACAGCAGTGCCAAATTGGAATCTTTTTTCAACTGTGCTGCTGCACTTATGACTTTACAGCTGCAGGACCTCACTTTAGTCTCCATGCAAGATTTCACGGACTTAATTGCACAACCCCCA
Seq A exon
GATTCTGTTAGAGCTTTTGAACATCCAGGTTTCATCATGAGGCTGATTCTTGATAATGACACCATTAAGTTTGAACCTGAGTTGAGTGACTATATAGATATCTTTCTAAATGTTTATGACGTCATGATTAAAGCTGTCAGTTTTGTGCCAAGAGTTGAGACAAAATTGTATTCCAAGTGG
Seq C2 exon
AGAAACAAAGCAAAACCAGGACATTTTTACTTTTCTCATATTCAAAGGTCTGTCACCTTTCAGCATTCTGAAGTTTCGTCTCCTCAGAACTCTCATTTTAAGATTGTGTCACCCTTCAGTGTTCTTGGCTTTACATGGAGATGCCAATTATGACTTCCAACTTTGCTCGACCTTGAGGCTTTGTTTCCTGGCAGCCCCTCCCATGCATCCACCTTGCCGGAAACTCATTAAAGCAAAGCTTAGACCACCAAGGATCAGCAGGGTCCCCAGGGCAGCTGCTCACTTCTGCACATAATGACCTTTCAACTCATGCTTTCTCTCATTTTGGTCCCTTAGACTTTTTTTTTTGTTGTTATTTCCTTAGCTATACGTTATAAAAGATAAAGTCAGCTTTATTATCCTGGCATATTTATGTGTTTTGAATTGAGTAGTTGTTTTCTGGATATCTATTCCTCATACTACCATGAATAGAAGTCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'13-14,'13-13,14-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGCTGCAGGACCTCACTT
R:
AAGCCTCAAGGTCGAGCAAAG
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)