DreEX0027487 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25239320-25240489:-
Coord C1 exon
chr9:25240306-25240489
Coord A exon
chr9:25239975-25240154
Coord C2 exon
chr9:25239320-25239592
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTCTTCATTTAAGCAT
3' ss Score
7.86
5' ss Seq
TGGGTAAAC
5' ss Score
3.32
Exon sequences
Seq C1 exon
TTGGATACCAGAAGTGCAGAAAATCTATCATCGTGGTAACAAGCGCAATCTGATCCCCAGCAACAGTAGTGTTGCACGACTGCAGTCTTTCTACAATTGTGTGGCCACACTCATGACCTCACAGCTCCAAAGCCTGGCACTTGAGTCTATGCAGGACTACACACACCTCATCGCCCAGAACCCT
Seq A exon
CATTCAGTGCGTGTCTATGAGCATCCAGGGTTTGTCCTAAGACTGGTTCTGGACCAAAACACTATCAAATTTGAACCTGATTTCAAAGACTTTGAAGTAACTGTGCTAAATGTGTATAATGCGATGCTGAAATCCTTAAGTGTGATCCCTCGAGTGGAGACAAAGCTGTACTCAGAATGG
Seq C2 exon
CCTGGCCCAGAAACACACCATACTCTAAAGCCCATCATCCTACCAGAGATCCTGGAGGCCCAGCAGGAGAAGGTCAGACGGGTAATACGTGCAGAAAGTGCTGAGCCTTTGAAGCATGTCCATCTCTATGATAAGTATGCTCCGCTGGTGTCCCAGCAAGCTGAGGAGGATGTTACTCAGTTTTTGCTGGAGCAGCACTCTTTCCAGGAGCTGATGATGGAGGTGATCCGCTACCAACAACTGGCTGATGAAATCCAATGCAGCACAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGACTACACACACCTCA
R:
CCTCCATCATCAGCTCCTGGA
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]