RnoEX6039682 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60325361-60330086:-
Coord C1 exon
chr9:60329892-60330086
Coord A exon
chr9:60329177-60329356
Coord C2 exon
chr9:60325361-60325633
Length
180 bp
Sequences
Splice sites
3' ss Seq
TATTTTATTTGTTTTTATAGGAA
3' ss Score
9.89
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTTCTTTCAAGGTGGTTTCCAGAAGTGCAGAATATTTATTACCAAGGCAATAAAAAAAAGCAATTGCCAACTGGCGACAGCAGCGCCAAATTGGAGTCTTTTTTCAACTGTGCTGCTACACTCATGACCTTACAGCTGCAGGACCTCATTCTCGTCTCCATGCAAGACTTCACAGACCTCATCGCCCAACCTCCC
Seq A exon
GAATCAATTAGAGCTTTTGAGCATCCAGGTTTCATCATGAGGCTGGTTCTTGATAAAAAGGCCGTTAAATTTGAACCTGAATTTACTGACTACATAGATATCCTTGTAAATGTTTATGAAATCATGATTAAGGCTGTCAGCTTTGTGCCAAGAGTTGAGACGAAATTGTATTCCAAGTGG
Seq C2 exon
GAAAGCAAATCCAAGCCAACCACCTTGAAGCCCATAATTCTGGATGAAATTATAGATGCTCATAAAGAAAAGATTAGGGAGGTGGTTTTACGAGAGAGTGTGGCGCCAACAGAGCACCTCAAAATGTATGACAAATATCAGTTCTTGATTACTAGACAAGCTGAGCAAGATATTGAAGAGTTCCTGACTCAAAGTCAGAACTATGAGAGACTAATAGAGGAAATTCGCAAATACCAAAAGCTGGGAGAAGAAATACAGTACACATCTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'0-4,'0-1,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF102454=MRP-S22=WD(100=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCGCCAAATTGGAGTC
R:
TTTTGAGGTGCTCTGTTGGCG
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]