GgaEX1020205 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9263951-9266442:-
Coord C1 exon
chr7:9266386-9266442
Coord A exon
chr7:9265595-9265774
Coord C2 exon
chr7:9263951-9264226
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTTTTCCTGCTAGAAG
3' ss Score
8.62
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TTAGAAGATATCACAGAGATAGCAGAAAAGTTAAGAAATACCTGATCCAGATTAAAG
Seq A exon
AAGTCAGTTCGAGCCTACGAACACCCAGGTTTCATCCTGAGGGCAACACTTGTGAACGACTGTATTAAATTTGAACCTGACTTTAATGACTATGAGGATGTATTACTGAATGTCTATGCTGTTATGATTAATGCTGTCAGTGATATACCAAGAGTTGAGACCAAATTATTTTCTAAGTTG
Seq C2 exon
CCAAAAGGCGAGTCCCCATCAGCTGTCTTGAAACCTGTAATCCTTGATGAGATCTTGGATGAACATAAGAGAATGATCAGAGAAGAAATTATCAAAGAAAGCGCTGCACCCATGGAACATGTCAAGGTTTATGATAAGTACAGCTTCCTGATAAACAAGCAAGCGGAACAAGATACTGATCGGTTCCTGACTGAGGAGCATACTTTTGAAGAAATGAAAGGGGATATTATAAAGTATCAGAAACTCAGTGAGGAATTAAAATATAATTCTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'12-13,'12-12,13-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGAGATAGCAGAAAAGTTAAGA
R:
CTCAGTCAGGAACCGATCAGT
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]