HsaEX6017557 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196849356-196852953:-
Coord C1 exon
chr2:196852681-196852953
Coord A exon
chr2:196851790-196851917
Coord C2 exon
chr2:196849356-196849434
Length
128 bp
Sequences
Splice sites
3' ss Seq
AAACTTTTAATCTTTTGCAGACT
3' ss Score
8.62
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GAAAGTAAGTCTAAACCAACAACCTTGAAGCCCATAATTCTGAATGAAATTGTAGATGCTCACAAAGAAAAGATCAAGGAAGTTATTATGAAAGAGAGTGTGGCACCTACTGAGCACCTCAGACTCTATGACAAGTATGACTTTTTAATTACCAGAAAAGCTGAGCGAGATGTTGATAACTTCCTCGCAGAAAATCATAGTTATGAAAAAATAATAGATGAAATTTGCAAATACCAGAAACTAATAGAGGAAATACAGTACACATCCATAAAG
Seq A exon
ACTATTCGTTTAGGAATGTTTGAAATGCACTGTGAGGAATTAATCAGAGCTTTGGTGAAGCGAGCAGATATTATTTGTGGGAAACTTCTAGCTAAAATGTTCAGAGATCATCAGGAAGTAAATACAAG
Seq C2 exon
ATTATGCGATGAATTTGAGAGGATAGCTGAAAAAGCTCTTAGCACTCCTCCAAATACAGCAGAACTAATGGAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'16-17,'16-16,17-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGTGGCACCTACTGAGC
R:
TCTGCTGTATTTGGAGGAGTGC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)