GgaEX1020224 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9262091-9264226:-
Coord C1 exon
chr7:9263951-9264226
Coord A exon
chr7:9262335-9262462
Coord C2 exon
chr7:9262091-9262169
Length
128 bp
Sequences
Splice sites
3' ss Seq
AACTTAAATTTGTATTGCAGTAT
3' ss Score
5.68
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CCAAAAGGCGAGTCCCCATCAGCTGTCTTGAAACCTGTAATCCTTGATGAGATCTTGGATGAACATAAGAGAATGATCAGAGAAGAAATTATCAAAGAAAGCGCTGCACCCATGGAACATGTCAAGGTTTATGATAAGTACAGCTTCCTGATAAACAAGCAAGCGGAACAAGATACTGATCGGTTCCTGACTGAGGAGCATACTTTTGAAGAAATGAAAGGGGATATTATAAAGTATCAGAAACTCAGTGAGGAATTAAAATATAATTCTAGAAAG
Seq A exon
TATCTCCGTCTAGGAATGTTTGAACTGCATTGCGATGAATTAATAAACGCTTTGGCAAAGCGAGCAGATAATATTTGTGAAAAAATTATTGCCAAGATGCTCAAGAATCATCAAGATTTAAGTGTGAG
Seq C2 exon
ACTATGTGATGAATTTGAGAGAATATCAGAAAAAGCTCTTAGTACGCCATCTAGTACACAAGAACTAATGGAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAAGAAAGCGCTGCACCC
R:
AGTTCTTGTGTACTAGATGGCGT
Band lengths:
252-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]