RnoEX0028574 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60321228-60325633:-
Coord C1 exon
chr9:60325361-60325633
Coord A exon
chr9:60323994-60324121
Coord C2 exon
chr9:60321228-60321306
Length
128 bp
Sequences
Splice sites
3' ss Seq
AAATCTTTTTCACTCTGTAGACT
3' ss Score
7.07
5' ss Seq
AATGTACGA
5' ss Score
2.98
Exon sequences
Seq C1 exon
GAAAGCAAATCCAAGCCAACCACCTTGAAGCCCATAATTCTGGATGAAATTATAGATGCTCATAAAGAAAAGATTAGGGAGGTGGTTTTACGAGAGAGTGTGGCGCCAACAGAGCACCTCAAAATGTATGACAAATATCAGTTCTTGATTACTAGACAAGCTGAGCAAGATATTGAAGAGTTCCTGACTCAAAGTCAGAACTATGAGAGACTAATAGAGGAAATTCGCAAATACCAAAAGCTGGGAGAAGAAATACAGTACACATCTCGAAAG
Seq A exon
ACTGTTCGTCTGGGAATGTTTGAGATGCACTGTGAGGAACTGATCAGATCCTTGGTGAAGCGGGCAGATATCATCTGTGGGAAACTGATAGCCAAGATGTTCCGAGATCACCAGGAAGTAAACACAAT
Seq C2 exon
GTTATGCGAGGAGTTTGAGAAGATAGCTGAAAAGGCTCTGAGTACGCCTCCAAACACAGCCGAGCTCATGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'3-7,'3-6,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTACGAGAGAGTGTGGCGC
R:
GCTGTGTTTGGAGGCGTACTC
Band lengths:
248-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]