BtaEX6010421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84962363-84966081:-
Coord C1 exon
chr2:84965809-84966081
Coord A exon
chr2:84964664-84964791
Coord C2 exon
chr2:84962363-84962441
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTAATACCCAACGTTGCAGACT
3' ss Score
4.77
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAAAGTAAGTCTAAACCAACAATCTTGAAGCCAATAATTCTGAATGAAATTGTCGAAGCTCATAAAGAAAAGATTAAGGAGGTGGTTGTGCGTGAGAGCGTGGCACCCATTGAGCACCTCAGATTTTATGACAAGTATAATTTTTTAATTACCAGAAAAGCTGAGCAAGATGCTGATGCTTTCCTTGCAGAAAATCATCATTATGAGAAAATAATACAAGAAATTCGCAAATACCAAAAACTCATAGAGGATATACAGTACACATCTAGAAAG
Seq A exon
ACTGTTCGTTTAGGAATGTTTGAAGTGCGCTGTGAGGAATTAATCAGAGCTTTGGTGAAGCGAGCAGATGTCATTTGTGGAAAACTTATTGCTAAAATGTTCAGAGATCATCAGGAAGTAAATACAAG
Seq C2 exon
ATTATGTGAGGAATTTGAAAAGATATCTGAAAAAGCTCTTAGCACACCTCCAAATACAGCAGAACTAATGGAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGGAGGTGGTTGTGCGTG
R:
TGGAGGTGTGCTAAGAGCTTT
Band lengths:
252-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]