HsaEX6017578 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196741268-196749533:-
Coord C1 exon
chr2:196749309-196749533
Coord A exon
chr2:196746519-196746716
Coord C2 exon
chr2:196741268-196741423
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTTAATTATAAACAGGGA
3' ss Score
5.18
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GGCATTTTTCTGTTTTCATTGATCTGGTCCGTTGGTGCTTCTTGTACAGATGATGATCGATTGAAATTTAATAAGATTCTTCGAGAACTAATGGAAAGTCCAATTTCAGATCGAACTCGAAATACGTTTAAATTACAGAGTGGTACTGAGCAAACATCCTCAAAGGCACTAACTGTCCCATTTCCTGAAAAAGGAACAATTTATGATTATCAATTTGTCACTGAG
Seq A exon
GGAATAGGAAAATGGGAACCATGGATAAAGAAATTGAAAGAAGCTCCTCCAATTCCTAAAGATGTAATGTTTAATGAAATCATTGTGCCAACTCTGGACACAATTCGATACTCTGCATTAATGGAATTGCTGACCACCCATCAAAAGCCTTCAATATTTGTAGGACCAACAGGAACTGGGAAAAGTGTTTACATTACG
Seq C2 exon
AATTTTCTTTTAAATCAACTAAATAAGGAAATCTACAAACCTCTGCTAATTAACTTCTCAGCACAAACTACAGCAGCTCAAACTCAGAATATTGTCATGTCAAAATTGGACAAGAGAAGAAAGGGAGTTTTTGGTCCTCCTTTGGGCAAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(17.9=74.2)
C2:
PF127752=AAA_7=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGTGGTACTGAGCAAACA
R:
TCTTGCCCAAAGGAGGACCAA
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)