DreEX6036412 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25185409-25191313:-
Coord C1 exon
chr9:25191092-25191313
Coord A exon
chr9:25188679-25188876
Coord C2 exon
chr9:25185409-25185564
Length
198 bp
Sequences
Splice sites
3' ss Seq
GAGCATTGATACGCTAACAGGGT
3' ss Score
1.45
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCATCTTTGTATTTTGCCTCTTGTGGTCAGTCGGGGCCAGCTGCACTGAGGAAGGACGGGTGAAGTTTGATGGTTTGGTGAGGGAGATGTTGGTGGGTGGCCTCAGTGAAGAGACTCGCACACGCCATGGAATCCTGGAGCATGTAGAGCCTCCTGCCAAGCAGCTGACTGTGCCTTTACCCACAGAGGGAACGCTCTATGAATACCGCTTCCTCAAAGAG
Seq A exon
GGTCCAGGCAGATGGGAATTGTGGACCGAGGAGCTGAAGGCTTTCCCCCCCATTCCCAAAGATGTGCAGTTCAACGAAATAATTGTGCCTACGGAGAACACTGTACGCTACAATGCTCTCATGAAGCTGCTCATCACTCATCAGAAGCCCACCGTCTTTGTTGGCCCCACGGGGACTGGCAAGAGCGTCTATATTCTG
Seq C2 exon
GACTTTTTGCTGAATCGTCTGGAGAAGGATGTGTACAGTCCTCTGTTGATCAACTTCTCAGCACAAACAACAGCAGCACAGACCCAAAACATTATTATGTCAAAACTTGATAAAAGGAGGAAAGGAGTGTTTGGCCCTCCCCTGGGAAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(17.9=74.2)
C2:
PF127752=AAA_7=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAGGACGGGTGAAGTT
R:
GCTGCTGTTGTTTGTGCTGAG
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]