Special

MmuEX0015054 @ mm9

Exon Skipping

Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46276166-46280072:+
Coord C1 exon
chr1:46276166-46276390
Coord A exon
chr1:46278424-46278621
Coord C2 exon
chr1:46279917-46280072
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTTTACTGTAAACAGGGC
3' ss Score
5.36
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCATTTTTATGTTTTCATTGGCCTGGTCTGTTGGTGCAACTTGTACAGATGATGATCGTCTGAAATTCGATAAGATCCTCCGAGAGCTAATGGAAGGTCCAATTTCAGACCTAACTCGAAATAAGTTTAAGTTACTGAGTGGTACTGAGCAAACATCCTCAAAGGTGTTTATAGTGCCATTTCCTGAGAAGGGAACAATCTACGAATATCAGTTTATCCCGGAG
Seq A exon
GGCTTAGGAAGATGGGATAAATGGATAAAGAAATTGGCAGATACTCCTCCAATTCCCAAAGATGTACAGTTTATTGAGATCATTGTGCCAACTCTCGACACAATCCGTTACTCTGCTCTAATGCATTTACTGACCACTCATCAAAAGCCTTCAATATTTGTAGGACCAACAGGAACTGGAAAGAGTGTTTATATCATT
Seq C2 exon
AATTTTCTTTTAAATCAACTCAATAAGGACATCTACAAACCTCTTATAGTAAACTTCTCAGCCCAAACTACAGCAGCCCAAACTCAGAATATCATCATGTCGAAACTGGACAAAAGAAGAAAAGGAGTTTTTGGCCCTCCTTTAGGCAAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'39-36,'39-35,40-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127752=AAA_7=PU(17.9=34.8)

							
A:
PF127752=AAA_7=PU(17.9=74.2)

							
C2:
PF127752=AAA_7=FE(18.6=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000068738





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000068738f4197A, ENSMUSP00000068738f4198A, ENSMUSP00000068738f5803A, ENSMUSP00000068738f5806A, ENSMUSP00000068738f5807A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr2:195881795-195881992 
HIGH PSI
HsaEX6017578
(DNAH7)
Human
(hg19)
chr2:196746519-196746716 
HIGH PSI
HsaEX6017578
(DNAH7)
Rat
(rn6)
chr9:60216320-60216517 
ALTERNATIVE
RnoEX0028576
(Dnah7)
Cow
(bosTau6)
chr2:84885549-84885746 
HIGH PSI
BtaEX6010440
(DNAH7)
Chicken
(galGal4)
chr7:9227907-9228104 
HIGH PSI
GgaEX1020210
(DNAH7)
Chicken
(galGal3)
chr7:10718713-10718910 
Zebrafish
(danRer10)
chr9:25188679-25188876 
HIGH PSI
DreEX6036412
(dnah7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCGATAAGATCCTCCGAGAGCT

				
R: 
CTGAGTTTGGGCTGCTGTAGT

				
Band lengths: 
245-443

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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