GgaEX1020210 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9225109-9229623:-
Coord C1 exon
chr7:9229399-9229623
Coord A exon
chr7:9227907-9228104
Coord C2 exon
chr7:9225109-9225264
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTCATATTAATTAAAATAGGGA
3' ss Score
4.54
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTATTTTTTTATTTTCACTGACATGGTCTGTAGGAGCTAGCTGTAAGGAAGATGATCGTCTGAAATTTGACAAAGTTGTTCGAGAAATGCTTAAAGGACCAATTAGTGAGGAGACAAGAGAGCAATATAAATTGTTGAGTAGTGTAGATCAACATGCTTCGAAGTCATTCACAGTGCCATTTCCAGCAGAAGGAACCATCTATGATTATCGGTTTGTCAAAAAG
Seq A exon
GGAGAAGGAATTTGGGAACCTTGGGTGGAAACGCTCAAATCAGCTCCTCCTATACCTCAGGATGTGACGTTTAATGAAATAATAGTGCCAACTCTGGATACAGTTCGATATATGTCTTTGATGGAGTTGTTGACAGTGCATCAAAAGCCTTCTATGTTTGTGGGGCCAACAGGAACTGGAAAAAGTACCTATATCACT
Seq C2 exon
AATTTCCTTTTAAATAATTTGAATAAAGAAGTCTACAAGCCACTGCTCATTAACTTTTCAGCACAAACTACGGCAGCTCAGACTCAGAATATTATAATGTCTAAGCTGGATAAAAGGAGAAAAGGAATTTTTGGGCCTCCTTTGGGGAAAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'36-45,'36-43,39-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(17.9=74.2)
C2:
PF127752=AAA_7=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTGTAGGAGCTAGCTGT
R:
GCAGTGGCTTGTAGACTTCTT
Band lengths:
247-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]