RnoEX0028576 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60214835-60218799:-
Coord C1 exon
chr9:60218575-60218799
Coord A exon
chr9:60216320-60216517
Coord C2 exon
chr9:60214835-60214990
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGGTTATTTACTGTAAACAGGGC
3' ss Score
5.46
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGCATTTTTCTGTTTTCATTGATCTGGTCTGTCGGTGCATCTTGTACAGCTGATGATCGTATAAAATACAATAAGATCCTCCGAGAGTTGATGGAAGGTCCAATTTCAGACCTAACTCGAAATAAGTTTAAATTACTGAGTGGTACTGAGCAAACGTCCTCAAAGGCATTAACAGTGCCCTTTCCTGAAAAGGGAACAATATATGATTATCAGTTTATCCCAGAG
Seq A exon
GGCTTAGGAAGATGGGATCAATGGATAAAGAAATTGGCAGATACTCCCCCAATTCCCAAAGATGTACAGTTTAATGAGATCATTGTGCCAACTCTAGACACGGTCCGTTACTCTGCTCTAATGAGTTTACTGACCACTCATCAAAAGCCTTCGATATTTGTAGGACCAACAGGCACTGGGAAGAGTGTTTATATCATT
Seq C2 exon
AATTTTCTTTTAAATCAACTCAATAAGGACATCTACAAACCTCTTATAGTTAACTTCTCAGCCCAAACTACAGCAGCCCAAACTCAGAATATCATCATGTCAAAACTGGACAAAAGAAGAAAAGGAGTTTTTGGCCCTCCTTTAGGCAAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'34-38,'34-37,35-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(17.9=74.2)
C2:
PF127752=AAA_7=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGTGGTACTGAGCAAACG
R:
TCTTGCCTAAAGGAGGGCCAA
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]