HsaEX6017597 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196620857-196640707:-
Coord C1 exon
chr2:196640570-196640707
Coord A exon
chr2:196636384-196636614
Coord C2 exon
chr2:196620857-196621009
Length
231 bp
Sequences
Splice sites
3' ss Seq
ATAGTTTGGATTCTTCATAGTCT
3' ss Score
3.55
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CACAAAAGCTACATCGAATACACAAAGACTCTGCCACTGACCCCAGCACCAGAAATCTTTGGGATGAATGCCAATGCAGATATCACTAAGGATCAGTCAGAAACTCAGCTGCTATTTGATAACATTCTTCTTACACAG
Seq A exon
TCTCGTTCAGCAGGTGCTGGTGCAAAATCATCAGATGAAGTAGTGAATGAGGTCGCTAGTGACATCTTGGGCAAACTTCCAAACAACTTCGACATCGAGGCTGCCATGAGGAGGTACCCAACAACTTATACTCAGAGCATGAACACTGTACTTGTCCAAGAGATGGGACGGTTCAATAAGTTACTGAAGACCATAAGAGATTCGTGCGTAAATATTCAAAAAGCAATCAAG
Seq C2 exon
GGGCTTGCAGTCATGTCTACAGATCTTGAAGAAGTGGTTAGCAGCATTTTGAATGTCAAAATTCCAGAAATGTGGATGGGTAAATCCTACCCAAGCCTTAAACCACTTGGCAGCTATGTGAATGACTTCCTTGCAAGACTAAAATTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'68-69,'68-68,69-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=PU(61.8=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAAAGCTACATCGAATACACA
R:
AGAATTTTAGTCTTGCAAGGAAGTCA
Band lengths:
286-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)