BtaEX6010459 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84781717-84789721:-
Coord C1 exon
chr2:84789584-84789721
Coord A exon
chr2:84784932-84785162
Coord C2 exon
chr2:84781717-84781869
Length
231 bp
Sequences
Splice sites
3' ss Seq
ATAGTTTGAACTCTTCCCAGTCT
3' ss Score
3
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CACAACAGCTACATTGAATACACAAAGACACTGCCTCTGACCCCAGCTCCAGAAGTCTTTGGGATGAATGCCAATGCTGATATCACTAAAGATCAGTCAGAAACTCAACTGCTGTTCGACAATATTCTTCTCACACAG
Seq A exon
TCTCGTTCAGCAGATGCTGGTGCAAAATCATCGGATGAAGTGGTGGATGAGGTTGCTGGTGACATCTTGGGTAAACTTCCAAACAACTTTGACGTTGAGTCTGCAATGAGGAGATACCCAACCACTTACACTCAGAGCATGAACACAGTGCTTGTTCAAGAAATGGGACGGTTCAATAAGTTGCTGCAGACCATAAGAGACTCATGCATTAACATCCAGAAAGCAATCAAG
Seq C2 exon
GGGCTTGTAGTGATGTCTACAGATCTTGAGGAAGTGGTTAGCAGTATTTTGAATGTCAAGATCCCAGGAATGTGGATGGGGAAATCATACCCAAGCCTTAAACCACTTGGGAGCTATGTGAATGACTTCCTTGCAAGACTAAAGTTTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'64-71,'64-70,66-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACAGCTACATTGAATACACA
R:
TGCAAAAACTTTAGTCTTGCAAGGA
Band lengths:
290-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]