RnoEX0028583 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60091849-60108500:-
Coord C1 exon
chr9:60108363-60108500
Coord A exon
chr9:60103817-60104047
Coord C2 exon
chr9:60091849-60092001
Length
231 bp
Sequences
Splice sites
3' ss Seq
TAATTGTTTGAACTCTTCAGTCT
3' ss Score
2.95
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CACAAAAGCTACATTGAATACACAAAGACTCTTCCACTGATCCCAGACCCAGAAATCTTTGGGATGAACGCCAATGCCGACATCACTAAGGACCAGTCCGAGACGCAGCTGCTGTTTGATAACATTCTCCTCACCCAG
Seq A exon
TCTCGCTCATCAGGTTCTGGAGCGAAGTCATCGGATGAGGTAGTCAATGAGGTTGCTGGAGACATCCTGGGTAAACTTCCAAACAACTTCGATATTGAATCTGCCATGAGGAGATACCCAACAACCTACACTCAGAGCATGAACACCGTCCTTGTCCAAGAGATGGGCCGTTTCAATAAGCTGCTGATAACCATAAGGGAATCATGCATTAATATTCAAAAAGCGATCAAG
Seq C2 exon
GGACTCGTTGTGATGTCTACAGAGCTGGAGGAAGTGGTCAGCAGCATCCTGAATGTCAAAATTCCAGGGATGTGGATGGGTAAATCCTACCCCAGCTTGAAGCCACTTGGCAGCTATGTGAATGACTTCCTCGCAAGACTAAAATTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'65-67,'65-65,68-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTACATTGAATACACAAAGACT
R:
GCAGGAATTTTAGTCTTGCGAGG
Band lengths:
284-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]