MmuEX0015036 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46400579-46413502:+
Coord C1 exon
chr1:46400579-46400716
Coord A exon
chr1:46409660-46409890
Coord C2 exon
chr1:46413350-46413502
Length
231 bp
Sequences
Splice sites
3' ss Seq
TAATTGTTTGAATTCTTCAGTCT
3' ss Score
3.86
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CACAAAAGCTACATCAACTACACAAAGACTTTGCCACTGATCCCAGCACCAGAAGTCTTTGGGATGAATGCCAATGCCGACATCACTAAGGACCAGTCGGAGACGCAGCTGCTGTTTGATAACATTCTCCTTACCCAG
Seq A exon
TCTCAGTCATCAGGTTCTGGAACAAAGTCATCAGATGAAGTAGTAAATGAGGTTGCTGGAGATATCCTGAGTAAACTTCCAAACAACTTTGATGTTGAAGCTGCCATGAGGAGATACCCAACAACTTACACTCAGAGCATGAACACTGTCCTTGTCCAAGAGATGGGACGTTTCAATAAGTTGCTGATAACCATAAGAGAATCATGCATTAATATTCAAAAAGCAATCAAG
Seq C2 exon
GGACTTGTCGTGATGTCTACAGAGCTGGAGGAAGTGGTGAGCAGCATCCTGAATGTCAAAATCCCAGTGATGTGGATGGGTAAATCCTACCCCAGCCTGAAGCCACTAGGCAGCTATGTGAATGACTTCCTCGAAAGACTAAAATTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'67-65,'67-64,69-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.4=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=PD(12.0=71.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACATCAACTACACAAAGACT
R:
TGCAGGAATTTTAGTCTTTCGAGGA
Band lengths:
284-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: