DreEX6036435 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25147781-25151783:-
Coord C1 exon
chr9:25151646-25151783
Coord A exon
chr9:25151301-25151531
Coord C2 exon
chr9:25147781-25147933
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTGCTCGATTTCTCCCTCAGTCC
3' ss Score
7.62
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TACAACAGCTACATTGAGTACACCAAAACGCTTCCTCTAAATCCCTCACCTGAAATCTTTGGGATGAATGCCAATGCTGATATTACCAAGGACCAAGTGGAAACACAGCTGTTGTTTGATAGCATCCTTCTCACTCAG
Seq A exon
TCCCGCTCTTCAGGTGGCAGTGCTGCATCCTCAGATGACATGGTGTTTGAAGTGGCTGCAGACATCCTCAATAAACTTCCTCAAGATTTCGATACAGATGCTGCCATGCGCAAGTACCCCACCAGCTACAACCAAAGCATGAACACAGTGCTGGTGCAAGAAATGGGACGATTCAACAAACTCCTCCAAACCATCCGGGATTCGTGTGTCAATATCCAGAAGGCCATCAAG
Seq C2 exon
GGTCTGGTGGTAATGTCTGCTGAACTTGAGGAAGTAGTGAGCAGTATTCTGAAGGGCCGGATCCCTGCTATGTGGATGAAGAAATCCTATCCCAGCCTCAAACCACTGGGAGGCTACATCAGTGACTTTCTTGAAAGACTAAAGTTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'62-62,'62-61,63-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.7=100)
A:
PF0302810=Dynein_heavy=FE(13.1=100)
C2:
PF0302810=Dynein_heavy=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACAGCTACATTGAGTACACCA
R:
AACTTTAGTCTTTCAAGAAAGTCACT
Band lengths:
284-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]