HsaEX6021034 @ hg19
Exon Skipping
Gene
ENSG00000141048 | MYH4
Description
NA
Coordinates
chr17:10354094-10355647:-
Coord C1 exon
chr17:10355258-10355647
Coord A exon
chr17:10354643-10354769
Coord C2 exon
chr17:10354094-10354212
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTCTACCTCTCACCCCAGGCA
3' ss Score
9.56
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCCCGCATTGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCCGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAGCTGGAGGAGATCAGTGAGAGGCTGGAAGAAGCCGGTGGGGCCACTTCAGCCCAGATTGAGATGAACAAGAAGCGGGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAAGAGTCCACCCTGCAGCACGAAGCCACGGCAGCTGCTCTTCGGAAGAAGCACGCAGATAGTGTGGCTGAGCTTGGGGAGCAGATTGACAGCCTTCAGCGGGTCAAGCAGAAGCTGGAGAAGGAAAAGAGTGAGCTGAAGATGGAGATCAATGACCTTGCTAGTAACATGGAGACTGTCTCCAAAGCCAAG
Seq A exon
GCAAACTTTGAGAAAATGTGCCGCACCCTAGAGGACCAGCTTAGTGAAATAAAAACAAAGGAAGAAGAGCAACAACGCTTAATAAATGAGTTGTCAGCCCAGAAGGCACGTTTACACACAGAATCAG
Seq C2 exon
GTGAGTTTTCACGACAGCTAGATGAAAAAGATGCTATGGTTTCTCAGCTATCCCGAGGCAAACAAGCATTTACACAACAGATTGAAGAATTAAAGAGGCAGCTAGAAGAGGAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141048-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.721 C2=0.825
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGTGTGGCTGAGCTTGGG
R:
AGTCTCCTCTTCTAGCTGCCT
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)