HsaEX6021040 @ hg38
Exon Skipping
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10447013-10448520:-
Coord C1 exon
chr17:10448396-10448520
Coord A exon
chr17:10447818-10448126
Coord C2 exon
chr17:10447013-10447216
Length
309 bp
Sequences
Splice sites
3' ss Seq
TAAATGTTGCTTTTATTAAGGCA
3' ss Score
4.37
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTGACAGAGCAAATTGCAGAGGGTGGAAAGCATATCCATGAACTGGAGAAAGTAAAGAAACAACTTGATCATGAGAAGAGTGAACTACAGACTTCCCTAGAGGAAGCAGAG
Seq A exon
GCATCTCTTGAGCATGAAGAAGGCAAAATTCTTCGCATTCAACTTGAGCTAAATCAGGTGAAATCTGAGATTGACCGAAAAATTGCTGAAAAAGATGAAGAACTCGATCAGCTAAAGAGGAACCATCTCAGAGTTGTGGAGTCAATGCAGAGTACACTGGATGCTGAGATCAGGAGCAGAAATGATGCTCTGAGGATCAAGAAGAAGATGGAGGGAGATCTTAATGAAATGGAAATCCAGCTGAACCATGCCAACCGCCAGGCTGCTGAGGCACTAAGGAATCTTAGAAACACACAAGGAATACTGAAG
Seq C2 exon
GACACTCAGCTACATTTGGATGATGCCATCAGAGGCCAAGATGACCTTAAGGAACAACTGGCAATGGTTGAGCGCAGAGCTAACCTGATGCAGGCTGAAGTTGAAGAGCTCAGGGCATCCCTGGAACGGACTGAGAGAGGCAGGAAAATGGCAGAGCAAGAGCTTCTGGATGCCAGTGAACGTGTGCAACTTCTGCACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.456 C2=0.632
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.8=100)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(12.1=35.0)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTTCTGACCTGACAGAGC
R:
CAGAAGTTGCACACGTTCACTG
Band lengths:
319-628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains