MmuEX0030360 @ mm10
Exon Skipping
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67255832-67257018:+
Coord C1 exon
chr11:67255832-67255956
Coord A exon
chr11:67256400-67256495
Coord C2 exon
chr11:67256945-67257018
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGATTAAGAAGAAGATGGAGGGA
3' ss Score
-36.13
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
AGGAGATCTCTGACCTGACCGAGCAGATTGCTGAGGGAGGGAAGCACATCCATGAGCTGGAGAAAATCAAGAAGCAAATTGATCAGGAAAAGAGTGAATTACAGGCTTCTCTGGAGGAAGCGGAG
Seq A exon
GGAGACCTCAATGAGATGGAGATCCAGCTGAACCATGCCAACCGCCAGGCTGCGGAGGCAATCAGGAACCTTCGGAACACCCAGGGAATGCTGAAG
Seq C2 exon
GCATCCAAGAACAAGTCATTAAGGGTACTTGTAGATACTCCTATTTAATCAGACTCTGAGCTAATAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-'53-51,'53-50,54-51
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.466 C2=NA
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.3=100)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(10.0=30.1)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACCTGACCGAGCAGATT
R:
AGCTCAGAGTCTGATTAAATAGGAGT
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types