BtaEX6087180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30084058-30085597:-
Coord C1 exon
chr19:30085473-30085597
Coord A exon
chr19:30084900-30085208
Coord C2 exon
chr19:30084058-30084261
Length
309 bp
Sequences
Splice sites
3' ss Seq
AAATGTTTCTTTTTCTAAAGGCA
3' ss Score
5.9
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
AGGAGATTTCTGACCTGACCGAGCAAATTGCAGAGGGAGGAAAGCATATCCATGAACTGGAGAAAGTAAAGAAACAAATAGAACAGGAGAAGGGTGAACTACAGGCTGCTCTAGAGGAAGCAGAG
Seq A exon
GCATCTCTCGAGCATGAAGAAGGCAAAATCCTTCGCATCCAACTTGAGTTAAATCAGGTGAAATCAGAGATCGACCGGAAAATCGCTGAAAAAGATGAAGAAATTGATCAGCTAAAGAGGAACCATCTCAGAGTTGTGGAGTCAATGCAGAGCACCCTAGATGCTGAGATCAGGAGCAGGAATGATGCCCTGAGGATCAAGAAGAAGATGGAGGGAGACCTCAATGAAATGGAAATCCAGCTGAACCATGCCAACCGCCAAGCTACTGAGGCAATAAAGAATCTTAGAAACACACAAGGAGTACTGAAG
Seq C2 exon
GACACTCAGCTCCACTTGGATGATGCCATCAGGGGCCAGGATGACCTTAAGGAGCAGCTGGCCATGGTTGAGCGCAGAGCCAACCTGATGCAAGCTGAGATTGAAGAGCTGAGGGCATCGCTGGAACAGACAGAGAGGAGCAGGCGAGTGGCAGAGCAAGAGCTTTTGGACGCCAGTGAGCGTGTGCAGCTTCTGCACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.388 C2=0.574
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.9=100),PF045827=Reo_sigmaC=PD(23.9=81.0)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.8=34.0)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTTCTGACCTGACCGAGC
R:
CAGAAGCTGCACACGCTCA
Band lengths:
318-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]