DreEX6026959 @ danRer10
Exon Skipping
Gene
ENSDARG00000079564 | vmhc
Description
ventricular myosin heavy chain [Source:ZFIN;Acc:ZDB-GENE-991123-5]
Coordinates
chr2:24603185-24604816:-
Coord C1 exon
chr2:24604692-24604816
Coord A exon
chr2:24603467-24603775
Coord C2 exon
chr2:24603185-24603388
Length
309 bp
Sequences
Splice sites
3' ss Seq
CACATTCTTCTGCTTGAAAGGCA
3' ss Score
4.57
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AGGAGATTTCTGATCTCACCGAGCAACTTGGTGAGGGAGGAAAGAGCATCCATGAGCTGGAGAAAATGAGGAAACAGTTGGAGCAAGAAAAAAGTGAGATTCAATCTGCTCTGGAAGAGGCAGAG
Seq A exon
GCATCACTGGAGCACGAGGAGGGTAAGATTCTGCGAGCCCAGCTGGAGTTCAGCCAAATTAAGGCTGATATCGAGCGCAAACTAGCCGAGAAGGATGAAGAGATGGAGCAGAGCAAACGCAATTTGCAGAGGACCATTGACACTCTGCAAAGCTCCTTGGAGTCAGAAACCAGAAGCAGAAATGAGGCCCTCAGAATAAAAAAGAAGATGGAGGGCGACCTGAATGAGATGGAGATCCAGCTTAGTCAGGCAAACCGACAAGCAGCAGAGGCCCAAAAACAACTTAAGAGTGTGCATGCACATATGAAA
Seq C2 exon
GATGCTCAGCTTCAGCTGGACGACTCCCTGAGAACAAATGAAGATCTTAAGGAGAACACAGCCATTGTAGAGAGACGCAACAACCTTCTGCAGGCTGAACTAGAGGAACTCAGAGCAGCTCTTGAGCAAACCGAAAGAGGCCGTAAGCTTGCTGAGCAGGAGCTTCTGGATACCAGTGAAAGAGTACAGCTGCTGCACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079564-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.816 C2=0.882
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(12.3=100),PF045827=Reo_sigmaC=PD(25.0=83.3)
A:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(17.4=56.3)
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCTGATCTCACCGAGCA
R:
CTGGGAGTGCAGCAGCTGTA
Band lengths:
326-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]