HsaEX6021100 @ hg38
Exon Skipping
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10630288-10632016:-
Coord C1 exon
chr17:10631813-10632016
Coord A exon
chr17:10631611-10631736
Coord C2 exon
chr17:10630288-10630458
Length
126 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTCCTCTTGCCCTAGAAC
3' ss Score
7.54
5' ss Seq
GACGTAAGG
5' ss Score
7.23
Exon sequences
Seq C1 exon
GATACGCAGCTCCACCTGGATGATGCCCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATTGTGGAGCGCAGAGCCAACCTGCTGCAGGCCGAGGTGGAGGAGCTGCGGGCTACTCTGGAGCAGACGGAGAGGGCCCGGAAACTGGCGGAACAGGAGCTCCTGGACTCCAACGAGAGGGTGCAGCTGCTGCATACCCAG
Seq A exon
AACACCAGCCTCATCCACACCAAGAAGAAGCTGGAGACAGACCTCATGCAGCTCCAGAGTGAGGTAGAAGATGCCAGCAGGGATGCAAGGAACGCTGAGGAGAAGGCCAAGAAGGCCATCACGGAC
Seq C2 exon
GCTGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTTGAGCGGATGAAGAAGAACCTGGAACAGACGGTGAAGGACCTGCAGCATCGTCTAGATGAGGCCGAGCAGCTGGCGCTGAAGGGCGGGAAGAAGCAGATCCAGAAACTGGAGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-'42-39,'42-37,43-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.881 C2=0.702
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
PF0157614=Myosin_tail_1=FE(4.8=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACGCAGCTCCACCTGGAT
R:
TGGTGTCCTGCTCCTTCTTCA
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains