RnoEX6047760 @ rn6
Exon Skipping
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53642551-53643890:+
Coord C1 exon
chr10:53642551-53642754
Coord A exon
chr10:53642827-53642952
Coord C2 exon
chr10:53643720-53643890
Length
126 bp
Sequences
Splice sites
3' ss Seq
CACTCCCTCCTCCTCCTCAGAAC
3' ss Score
8.69
5' ss Seq
GATGTGAGG
5' ss Score
4.17
Exon sequences
Seq C1 exon
GACACCCAGCTGCACCTGGATGACGCTCTCCGAGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATCGTGGAGCGCAGAGCCAACCTGCTGCAGGCTGAGGTGGAGGAGCTGCGGGCCACTCTGGAGCAGACGGAGAGGGCCCGGAAGCTGGCAGAGCAGGAGCTGCTGGACTCCAACGAGAGGGTTCAGCTGCTGCACACCCAG
Seq A exon
AACACCAGCCTCATCCACACCAAGAAGAAGTTGGAGACTGACCTCACACAGCTCCAGAGTGAGGTGGAGGATGCCAGCAGGGACGCAAGGAACGCCGAGGAGAAGGCCAAAAAGGCCATCACTGAT
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTAAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCACTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.857 C2=0.702
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
PF0157614=Myosin_tail_1=FE(4.8=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGGAGCAGACGGAGAG
R:
TTCTGGATCTGCTTCTTGCCG
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]