HsaEX6021136 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11783646-11793664:+
Coord C1 exon
chr17:11783646-11783748
Coord A exon
chr17:11784300-11784539
Coord C2 exon
chr17:11793503-11793664
Length
240 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTGTTTCCTGTACAGCGT
3' ss Score
9.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTATGATCGGAGCAAGCTGTCCCTAAAGGAGATCACAAATGTACAGTATGTTTCCTGTATGAACCCCACGGCAGGCAGCTTCACCATCAACCCCCGGCTTCAG
Seq A exon
CGTCACTTCAGCGTGTTTGTCCTCTCCTTCCCGGGGGCAGATGCCCTGTCCTCTATCTACAGCATCATCCTCACTCAGCATCTGAAGCTCGGAAACTTCCCGGCGTCCCTGCAGAAATCCATCCCCCCACTGATCGATCTGGCCCTCGCCTTCCACCAGAAAATTGCTACCACCTTCCTACCCACAGGAATCAAATTCCACTACATCTTCAACCTCAGAGATTTTGCCAACATTTTCCAG
Seq C2 exon
GGCATTCTCTTCTCCTCAGTGGAATGTGTGAAATCCACATGGGATCTTATAAGGCTCTATCTGCATGAATCAAATCGAGTTTATCGGGATAAGATGGTAGAAGAAAAGGACTTTGATCTTTTTGATAAAATCCAGACAGAAGTGCTCAAGAAAACTTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'72-72,'72-66,77-72=AN
Average complexity
A_C3
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(29.0=100)
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCTCTGTCCCCCAGG
R:
CAAGATCGCTCCACTGCACTC
Band lengths:
197-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains