GgaEX0001202 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1074665-1085096:+
Coord C1 exon
chr18:1074665-1074767
Coord A exon
chr18:1076120-1076359
Coord C2 exon
chr18:1084935-1085096
Length
240 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTTTCTCTTCCTCAGCGT
3' ss Score
10.38
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTATGACAGGACCAAGCTGTCACTGAAGGAGATCACAAACGTGCAGTATGTGTCGTGCATGAACCCAACAGCGGGGAGCTTCACCATCAACCCACGCCTGCAG
Seq A exon
CGTCACTTCTGCGTCTTCGCCCTTTCCAGCCCTGGGCAGGACGCCTTGTCCAGGATCTACAGCACCATCTTAATGCAGCACCTGGCAAACAGGAATTTCTCAGGAGCTGTGCAGAAGTCAGCTCAGCAGCTGATCTCCCTGGCCCTGGGCCTGCACCAGAGGGTAGCTGCTGCTTTCCTGCCGACGGCTATCAAGTTCCACTACATTTTCAACCTGAGAGACTTCTCCAATATCTTCCAA
Seq C2 exon
GGCCTTCTGTTTTCTACCCCTGAATGTCTGAAGCAACCGCAAGACCTGGTGAAGCTCTACCTGCATGAGTCAAACCGGGTGTACCGGGATAAGATGGTTGAAGAAAAGGATTATGGCACCTTTGATAAAATCCAGCTGGAGATGGTGAAGAAGTTCTATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'46-47,'46-45,47-47
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(29.0=100)
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGACAGGACCAAGCTGTCA
R:
AGAACTTCTTCACCATCTCCAGC
Band lengths:
260-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]