RnoEX0028646 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52502039-52515877:-
Coord C1 exon
chr10:52515775-52515877
Coord A exon
chr10:52515083-52515322
Coord C2 exon
chr10:52502039-52502200
Length
240 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGTTTTCTTCTACAGCGC
3' ss Score
11.63
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTATGATCGGAACAAACTGTCTCTGAAGGAGATCATGAATGTACAGTACATTTCCTGTATGAACCCCACTGCAGGCAGCTTTACCATCAACCCAAGACTCCAG
Seq A exon
CGCCACTTCAGTGTGTTTGCCCTCTGCTTCCCAGGAGCTGATGCTCTCTCTTCCATCTATAGCACCATCCTGACCCATCACCTGAAGCTTGGAAACTTCCCCACCACCCTGCAAAAATCCATCCCTTCTCTAATCAACCTGGCTGTCACCTTCCACCAGAAAATTGCCACCACATTTCTGCCCACAGCAATCAAATTTCACTACATCTTCAACCTCAGAGATTTTGCCAATATTTTCCAA
Seq C2 exon
GGCATTCTTTTCTCCTCCACTGAATGTGTGAAGTCCACACAGGACCTCGTAAAACTCTATCTGCATGAGTCAGACCGGGTTTATCGGGATAAGATGGTGGAGGAAAAGGATTTCAATCTTTTTGACAAACTCCAAACAGAATTCCTCAAGAAAAATTTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'55-56,'55-53,57-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(29.0=100)
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGATCGGAACAAACTGTCTCTGA
R:
AATTTTTCTTGAGGAATTCTGTTTGG
Band lengths:
260-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]