HsaEX6021136 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11686963-11696981:+
Coord C1 exon
chr17:11686963-11687065
Coord A exon
chr17:11687617-11687856
Coord C2 exon
chr17:11696820-11696981
Length
240 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTGTTTCCTGTACAGCGT
3' ss Score
9.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTATGATCGGAGCAAGCTGTCCCTAAAGGAGATCACAAATGTACAGTATGTTTCCTGTATGAACCCCACGGCAGGCAGCTTCACCATCAACCCCCGGCTTCAG
Seq A exon
CGTCACTTCAGCGTGTTTGTCCTCTCCTTCCCGGGGGCAGATGCCCTGTCCTCTATCTACAGCATCATCCTCACTCAGCATCTGAAGCTCGGAAACTTCCCGGCGTCCCTGCAGAAATCCATCCCCCCACTGATCGATCTGGCCCTCGCCTTCCACCAGAAAATTGCTACCACCTTCCTACCCACAGGAATCAAATTCCACTACATCTTCAACCTCAGAGATTTTGCCAACATTTTCCAG
Seq C2 exon
GGCATTCTCTTCTCCTCAGTGGAATGTGTGAAATCCACATGGGATCTTATAAGGCTCTATCTGCATGAATCAAATCGAGTTTATCGGGATAAGATGGTAGAAGAAAAGGACTTTGATCTTTTTGATAAAATCCAGACAGAAGTGCTCAAGAAAACTTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(29.0=100)
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGATCGGAGCAAGCTGTCC
R:
AAGTTTTCTTGAGCACTTCTGTCTG
Band lengths:
260-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)