HsaEX6021284 @ hg19
Exon Skipping
Gene
ENSG00000197566 | ZNF624
Description
zinc finger protein 624 [Source:HGNC Symbol;Acc:29254]
Coordinates
chr17:16550643-16557158:-
Coord C1 exon
chr17:16557078-16557158
Coord A exon
chr17:16552972-16553060
Coord C2 exon
chr17:16550643-16550708
Length
89 bp
Sequences
Splice sites
3' ss Seq
GGCTTATTTCTCTTCCTTAGGTA
3' ss Score
10.56
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACCGCCGAGCCGCCGCCATTGCTGGAAGCGTTCCCGCCCTGCTCTGCGAGTTCCCTCAGTTGTCCTCAGTTCGGCCGCCAG
Seq A exon
GTATGTCTTTGCAAGACTCCACTCTTTCCAGAGAGGGGAAACCAGAGGGAGAGATTATGGCTGCTGTGTTTTTCTCAGTTGGACGCCTG
Seq C2 exon
AGCCCTGAAGTTACCCAGCCAGATGAAGATCTTCACCTTCAGGCAGAAGAAACACAATTGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197566-'0-1,'0-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.414 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGCCATTGCTGGAAG
R:
TTACCAATTGTGTTTCTTCTGCCTG
Band lengths:
135-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)